- D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem., 81(25), 2340- 2361 (1977)
- A. C. Hindmarsh et al., SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers. ACM Trans. Math. Softw., 31(3), 363-396 (2005)
- W.A.Link and P.F.Doherty Jr., Scaling insensitivity analysis. Ecology, 83(12), 3299-3305(2002)
- M. C. Hill, Methods and guidelines for effective model calibration. U.S. Geol. Surv. Water Resour. Invest. Rep. 98-4005 (1998)
- B.J. Daigle et al. Accelerated maximum likelihood parameter estimation for stochastic biochemical systems. BMC Bioinformatics, 13, 68 (2012)
- B.S.Caffo et al. Ascent-based Monte Carlo expectation-maximization. J.Royal Statistical Society Series B, 67(2), 235-251 (2005)
- J.Elf and M.Ehrenberg, Spontaneous separation of bistable biochemical systems into spatial domains of opposite phases. IEEE Systems Biology, 1, 230-6 (2004)
- B. Drawert, S. Engblom and A. Hellander. URDME: A modular framework for stochastic simulation of reaction-transport processes in complex geometries. BMC Systems Biology, 6(76) (2012)
- Michaelis-Menten kinetics. http://en.wikipedia.org/wiki/Michaelis-Menten_kinetics
- Congote, John and Segura, Alvaro and Kabongo, Luis and Moreno, Aitor and Posada, Jorge and Ruiz, Oscar. Interactive Visualization of Volumetric Data with WebGL in Real-time In Proceedings of the 16th International Conference on 3D Web Technology (Web3D ’11). ACM, New York, NY, USA, 137-146. http: //dx.doi.org/10.1145/2010425.2010449
Skip to content