Basic Introduction to StochSS

Creating a User Account
Importing a Model
Creating a New Model
Running a Simulation and Visualizing results

Parameter Sweeps


Video Tutorial

Watch the recording of the tutorial given at the SIAM-CSE conference March 1-2, 2021.

Minitutorial on StochSS Live! recorded at SIAM CSE 21:

Legacy documentation

If you are interested in how StochSS is designed, or want to see examples of how it can be used for modeling and simulation, we recommend the paper on StochSS published in PLOS Computational Biology:

Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist

StochSS 1.9 Documentation

Technical Documents
StochSS user auth system (March 2014)
Notes on using custom reaction-diffusion meshes in StochSS