Basic Introduction to StochSS
Creating a User Account
Importing a Model
Creating a New Model
Running a Simulation and Visualizing results
Watch the recording of the tutorial given at the SIAM-CSE conference March 1-2, 2021.
- StochSS tutorial – Part 1 (L. Petzold & B. Drawert) Introduction to biochemical modeling with StochSS.
- StochSS tutorial – Part 2 (A. Hellander, F. Werde & B. Drawert) StochSS parameter inference, spatial simulation, and advanced topics.
Minitutorial on StochSS Live! recorded at SIAM CSE 21: https://www.siam.org/conferences/cm/conference/cse21
If you are interested in how StochSS is designed, or want to see examples of how it can be used for modeling and simulation, we recommend the paper on StochSS published in PLOS Computational Biology:
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist
StochSS user auth system (March 2014)
Notes on using custom reaction-diffusion meshes in StochSS